The detailed information of tRNA gene sequence


Sequence ID>R05100544
Genome IDAP008215
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr09
Start position on genome 23088528
End posion on genome 23088603
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
tgacaaaaatgacctgtaaattctggtaaaacactttgactggttcggggatctggagtatgattatagataagagtattattcacatttagacatagaa
tRNA gene sequence 
GCGCCCATGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGGCGATTGTGGGTTCGAGT
CCCACTGGGCGTGTTT
Downstream region at tRNA end position 
attattttttttctcttttaagactcagaaacagaaaactttttttataatttgtaattagcaaatacaagtacagatagacctacctcattcacctcta
Secondary structure (Cloverleaf model)
>R05100544	Arg	TCT
                   a      GTTT attattttttttctcttttaagactcagaaacagaaaactttttttataatttgtaattagcaaatacaagtacagatagacctacctcattcacctcta
                     G + T
                     C - G
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          T G
                    T     C A C C C     A
      T A A        G      | | | | |     G
    G       T C C G       G T G G G     C
    G       | | | |                 T T
    A       A G G C
      T A          G     CGATT
                    T + G
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T C T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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