The detailed information of tRNA gene sequence


Sequence ID>R05100545
Genome IDAP008215
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr09
Start position on genome 23576378
End posion on genome 23576304
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
ctgtggaaggggaaacacattttgttcttcgtagtagctgttcttactgtttgtaaaatgcttgggtcagttaaatgttccagagacaaaagttcgaatc
tRNA gene sequence 
GGGTGTTTGGTCTAGTGGTATGATTCTCGCTTCGGGTGCGAGAGGTCGCGAGTTCGATTC
TCGCAACACCCCATG
Downstream region at tRNA end position 
ttttgtctaattttttttaaaaaataggaattggtctgacatgggctttgtgttcatggccctctcctctttcctggcccatctgattcctctccctttt
Secondary structure (Cloverleaf model)
>R05100545	Pro	CGG
                   c      CATG ttttgtctaattttttttaaaaaataggaattggtctgacatgggctttgtgttcatggccctctcctctttcctggcccatctgattcctctccctttt
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C
                     T - A
                     T - A          T T
                    T     C G C T C     A
        G A        G      | | | | |     G
      T     T C T G       G C G A G     C
      G       | | +                 T T
      G     T G A T
        T A        T     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G
                    C G G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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