The detailed information of tRNA gene sequence


Sequence ID>R05100547
Genome IDAP008215
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr09
Start position on genome 22123501
End posion on genome 22123427
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gggggatttcggcaggagcaagtgagaagttttggagggaaaaagttgaaaagttttgtttataggatttataaaactatttataaatattggcatgaaa
tRNA gene sequence 
GGGCGTTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTC
TCGGAACGCCCCCTT
Downstream region at tRNA end position 
ttttgttgcttcgccttacatatctctctcctttctttttcttcgtcctctctttttttttctctttctttttcttcctccttatttttttcgttgcttc
Secondary structure (Cloverleaf model)
>R05100547	Pro	TGG
                   a      CCTT ttttgttgcttcgccttacatatctctctcctttctttttcttcgtcctctctttttttttctctttctttttcttcctccttatttttttcgttgcttc
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     T - A
                     T - A          T T
                    T     G G C T C     A
        G A        G      | | | | |     G
      T     T C T G       C C G A G     C
      G       | | +                 T T
      G     T G A T
        T A        T     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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