The detailed information of tRNA gene sequence


Sequence ID>R05100589
Genome IDAP008216
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr10
Start position on genome 20966496
End posion on genome 20966407
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tagaacaatggaactctcgcgcggttgtggttgtacctgtactgcaggaataggaaaactcgctattcactcagttttttttccataataagattatgga
tRNA gene sequence 
GGAGAGATGGCCGAGCGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGACTTTTGTTTA
CCGAGGGTTCGAATCCCTCTCTTTCCGTTT
Downstream region at tRNA end position 
ttcttaattcaccaacgttaatgattacaatgtatcaaatcaaatgacaatttattccagcaataatacaatacctttatttaatagaaattctctatac
Secondary structure (Cloverleaf model)
>R05100589	Ser	GGA
                   a      GTTT ttcttaattcaccaacgttaatgattacaatgtatcaaatcaaatgacaatttattccagcaataatacaatacctttatttaatagaaattctctatac
                     G - C
                     G - C
                     A - T
                     G + T
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    T       A G G C
      T C A        G     TGTAGACTTTTGTTTACC
                    T - A
                    A - T
                    G - C
                    C - G
                    A - T
                  T       C
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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