The detailed information of tRNA gene sequence


Sequence ID>R05100600
Genome IDAP008216
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr10
Start position on genome 11290044
End posion on genome 11289959
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
tatcacattagatagatatcatattcatggaatacgattcactttcaagatatcacattagatagatatcatattcatggaatatgattcactttcaagT
tRNA gene sequence 
GCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAG
GTTCGAGTCCTCTTCAAGGCATAA
Downstream region at tRNA end position 
Tacggagaatgcgcattcaatgagcattccccgtagaagtattccggaaatctgcgcctggcgctctcctctatcttctgaggtccttaaccacttccct
Secondary structure (Cloverleaf model)
>R05100600	Leu	CAA
                   T      ATAA Tacggagaatgcgcattcaatgagcattccccgtagaagtattccggaaatctgcgcctggcgctctcctctatcttctgaggtccttaaccacttccct
                     G - C
                     C - G
                     C - G
                     T - A
                     T - A
                     G - C
                     A - T          T G
                    T     T C T C C     A
      T A A        G      + | | | |     G
    G       A G T G       G G A G G     C
    G         | | |                 T T
    T       A C A C
      A G          G     TGCTAAAGAGCGT
                    C - G
                    G - C
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    C A A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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