The detailed information of tRNA gene sequence


Sequence ID>R05100601
Genome IDAP008216
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr10
Start position on genome 11288464
End posion on genome 11288388
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cgaatatttgccatctccgaatattttcgatttcatttttctatgatatgtctttctatatgaaaattggttatttacgatgtacgatgatccctgttaa
tRNA gene sequence 
GCATCCATGGCTGAATGGTTAAAGCGCCCAACTCATAATTGGTAAATTTGCGGGTTCAAT
TCCTGCTGGATGCACGC
Downstream region at tRNA end position 
gaaccggaacgttccataagtctattggaatggctctctatccatggaatctcatccatcatccatacataacgaattggtatggtatattcataccata
Secondary structure (Cloverleaf model)
>R05100601	Met	CAT
                   a      ACGC gaaccggaacgttccataagtctattggaatggctctctatccatggaatctcatccatcatccatacataacgaattggtatggtatattcataccata
                     G - C
                     C - G
                     A - T
                     T - A
                     C - G
                     C - G
                     A - T          T T
                    T     C G T C C     A
      T A A        G      | | + | |     A
    G       G T C G       G C G G G     C
    G         | | |                 T T
    T       A A G C
      T A          G     AAATTT
                    C   T
                    C - G
                    C - G
                    A - T
                    A - T
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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