The detailed information of tRNA gene sequence


Sequence ID>R05800009
Genome IDAP008216
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr10
Start position on genome 23271219
End posion on genome 23271133
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gttgacatctcatcagaggcaggcagctggctctgctttcgtcaggtaccacttaaaagataatatatattttcatttaattaatctagcaagacaggat
tRNA gene sequence 
GGGGTGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAATCCTGAGGTCGAGAGTTCGAG
CCTCTCTCACCCCAact
Downstream region at tRNA end position 
ttttttccgcttatttttttttgcaactccttaatccttctgtgacacaaattacatttttattttccttttctccaacttcttaatccttttatgataa
Secondary structure (Cloverleaf model)
>R05800009	Met	CAT
                   t      Aact ttttttccgcttatttttttttgcaactccttaatccttctgtgacacaaattacatttttattttccttttctccaacttcttaatccttttatgataa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C
                     G + T          C G
                    T     C T C T C     A
      T G A        G      | | | | |     G
    T       C G C G       G A G A G     C
    G       | | | |                 T T
    G       G C G C
      C T A        G     AGGTC
                    T + G
                    A - T
                    G - C
                    G - C
                    T   T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=13 (in A-loop)
GCTAAAGCGAGTG
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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