The detailed information of tRNA gene sequence


Sequence ID>R05900055
Genome IDAP008212
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr06
Start position on genome 12812950
End posion on genome 12813621
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
ttggtatgttattatagtaaacagatcaaaggatatcctctactattcgagaatattcatcttgacaagaaattctctatatattaagatatctctgaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACCGAGAAGGTCTATGGTTCGAA
TCCGTATAGCCCTAATt
Downstream region at tRNA end position 
gtccttttttagattttaggagagatatcctatgttgtttcctttagtacagttttcatttccctattagtacttgtttatagactggacaggcgcctgc
Secondary structure (Cloverleaf model)
>R05900055	Val	TAC
                   a      AATt gtccttttttagattttaggagagatatcctatgttgtttcctttagtacagttttcatttccctattagtacttgtttatagactggacaggcgcctgc
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
      T G A        A      | | + | |     G
    T       C T C G       T A T G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        A     AGGTC
                    A   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=595 (in A-loop)
GTGCGCCAATGCTTTTCAAGGGAGCTTATTATGCAATGAACATAGTGGATCTTCTTGCAAAATCAATGTC
TTCATGGATTCGAGAGAATAGGAGAACAGTCGCCTGACAAATAGTTGGTTCAGTCCGATTCAGGTACCAA
TCCAGGTGCCTAAACAAATAGAACCTTTATTGATTTGCTAGTTGATAAGGTAAATATCCAGCCCACTAAA
TGCTAGGCTTAATGAGGATAAGAGCCTCCAAAAAAATTCTTTTCGTTCTACGAACTTTAAGGTATATGAA
GTCTCATAGTCAACTCTTGTAGCGGAACGATAGAGACTCTATTTCACTTAGGTTGATTTAATTTAGGCTG
GAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGCTCTTAGATAGATCATAATAC
AAATAATCAATCAGAGCGCAGGGAGCCATCTCATTATCTTTCCGTAAAGAAAAACTATGGTGGACTAACT
GATCTTTCTATCAGTTGATAAAAGAGCCCAATGCAAAAAAAATGCATGTTGGGTCTTTGAAACAGTTCGA
ATCATTTCGATAATAATCTGTTTGGTCTGTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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