The detailed information of tRNA gene sequence


Sequence ID>R05900080
Genome IDAP008216
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr10
Start position on genome 11298332
End posion on genome 11299359
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
cccccccgtgtggtgtggcggcatggggatgtcaaaaggaaagggatggagtttttctcgcttttggcgtagcaggcctccctttgggaggcccgcgcgT
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTTTCACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAGCT
Downstream region at tRNA end position 
cgctagggaaaagaatagaagaagcatctgactctttcatgcatactccacttggctcggggggatatagctcagttggtagagctccgctcttgcaatt
Secondary structure (Cloverleaf model)
>R05900080	Glu	TTC
                   T      AGCT cgctagggaaaagaatagaagaagcatctgactctttcatgcatactccacttggctcggggggatatagctcagttggtagagctccgctcttgcaatt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T*      A
                    T T C
intron: position=34, length=951 (in A-loop)
GATAATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGC
GCCTGACCCGAAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTTGAATCGGAGTT
TGAAACCAAACAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCCATGTAGATCTAAC
TTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGGGGGGCACTACGGCTCCTCTCTTCTCGAGAAT
CCATACATCCCTTATCAGTGTATGGAGAGCTATCTCTCGAGCACAGGTTGAGGTTCGTCCTCAATGGGAA
AATGGAGCACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCTTTCATTCTGGGGTGACG
GAGGGATCGTACCATTCGAGCCTTTTTTTCATGCTTTTCCCGGCGGTCTGGAGAAAGCAGCAATCAATAG
GACTTCCCTAATCCTCCCTTCCTAAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAG
GTTGGATCTAGCCATAAGAGGAATGCTTGGTATAAATAAGCCACTTCTTGGTCTTCGACTCCCTAAGTCA
CTACGAGCGCCCTCGATCAGTGCAATGGGATGTGGCTATTTATCTATCTCTTGACTCGAAATGGGAGCAG
AGCAGGTTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACGCCTTCCTTTTT
CTGCCCATCGGAGTTATTTCCCAAGGACTTGCCATGGTAAGGGGGAGAAGGGGAAGAAGCACACTTGAAG
AGCGCAGTACAACGGAGAGTTGTATGCTGCGTAAAGGAAGGATGAATCGCTCCCGAAAAGGAGTCTATTG
ATTCTCTCCCAATTGGTTGGATCGTAGGGGCGATGATTTAC
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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