The detailed information of tRNA gene sequence


Sequence ID>R05900084
Genome IDAP008216
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr10
Start position on genome 20953427
End posion on genome 20954313
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cgggcgaggtctctggttcaagtccaggatggcccagctgcgccagggaaaagaatagaagaagcatctgactctttcatgcatactccacttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAGCc
Downstream region at tRNA end position 
gtgaacttagcggatactatgatagcaccgaattttgccaattcggcagttcgatctatgatttcgcattcatggacgttgataagatccttccatttag
Secondary structure (Cloverleaf model)
>R05900084	Ala	TGC
                   g      AGCc gtgaacttagcggatactatgatagcaccgaattttgccaattcggcagttcgatctatgatttcgcattcatggacgttgataagatccttccatttag
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=811 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGCTGTCTAATTGTCCAGGCGGTAATGGTAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACTGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAAAGATGGGCTGTCAAAAAGGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTAC
ATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGCTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAA
GTTGGCCCTTGCGAATAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAG
GAAAATCCATGGACCGACCCCATTATCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCG
GCGTCCAGGGGTCACGGACCGACCATAGACCCTGTTCAATAAGTGGAACACATTAGCCGTCCGCTCTCCG
GTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTTAAGTTTAAGATCAA
AGAGTCGGGCGGAAAAAGGGGAGAGCTCCCCGTTCCTGGTTCTCCTGTAGCTGGATTCCCCGGAACCACA
AGAATCCTTAGAATGGGATTCCAACTCAGCACCTTTTGTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGA
GAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGT
AGAACCCGTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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