Sequence ID | >R05900085 |
Genome ID | AP008216 |
Phylum/Class | Plant |
Species | Oryza sativa Japonica Group |
Chromosome
|
chr10
|
Start position on genome
|
20959894
|
End posion on genome
|
20960568
|
Amino Acid
|
Val
|
Anticodon
|
TAC
|
Upstream region at tRNA start position
|
cattttgctaaatgatatcaattaaacggtgtatatcctctactattagagaatattcatcttgacaagaaattctctatatattaagatatctctgaca
|
tRNA gene sequence
|
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACCGAGAAGGTCTACGGTTCGAA TCCGTATAGCCCTAATt
|
Downstream region at tRNA end position
|
gtccttttttagattttaggagagatatcctacgtttcctttagtatagttttcatttccctattagtacttgtttatagactggacaggcgcctgcgcc
|
Secondary structure (Cloverleaf model) | >R05900085 Val TAC
a AATt gtccttttttagattttaggagagatatcctacgtttcctttagtatagttttcatttccctattagtacttgtttatagactggacaggcgcctgcgcc
A - T
G - C
G - C
G - C
C - G
T - A
A - T T A
T A T G C C A
T G A A | | | | | G
T C T C G T A C G G C
C | | | | T T
G G A G C
G T A A AGGTC
A A
C - G
T - A
C - G
G - C
T C *
T A
T A C
intron: position=39, length=598 (in A-loop)
GTGCGCCAATGCTTTTCAAGGGAGCTTATTATGCAATGAACATAGTGGATCTTCTTGCAAAATCAATGTC
TTACTTCATGGATTCGAGAGAATAGGAGAACAGTCGCCTGACAAATAGTTGGTTCAGTCCGATTCAGGTA
CCAATCCAGGTGCCTAAACAAATAGAACCTTTATTGATTTGCTAGTTGATAAGGTAAATATCCAGCCCAC
TAAATGCTAGGCTTAATGAGGATAAGGGCCTCCAAAAAAATTCTTTTCGTTCTATGAACTTTAAGGTGTA
TGAAGTCTCATAGTCAACTCTTGTAGCGGAACGATAGAGACTCTATTTCACTTAGGTTGATTTAATTTAG
GCCGGAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGCTCTTAGATAGATCATA
ATACAAATAATCAATCAGAGCGCAGGGAGCCATCTCATTATCTTTCCGTAAAGAAAAACTATGGTGGACT
AACTGATCTTTCTATCAGTTGATAAAAGAGCCCAATGCAAAAAAATGCATGTTGGGTCTTTGAAACAGTT
CGAATCATTTCGATAATAATCCGTTTGATCTGTTTTAC
|
Intron | |
Comment/Decision | |
Genome/Seq. Info. | [RAP-DB] |