The detailed information of tRNA gene sequence


Sequence ID>R05300020
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 13536581
End posion on genome 13536505
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
aaagatttaagttctaaataattctaggtagcatataagaacgagacctggctagttcaggactccatttgcaagctgatcggataatttcattaccttc
tRNA gene sequence 
ACGAGTGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAA
TCCTGTCATCCCTACCT
Downstream region at tRNA end position 
attacttctcctatgggcagtaacgagggatcaattgagaggaggttgttgggacagtatcgatagccgccttttcacttattgctaggagtgattgtga
Secondary structure (Cloverleaf model)
>R05300020	Pro	TGG
                   c      ACCT attacttctcctatgggcagtaacgagggatcaattgagaggaggttgttgggacagtatcgatagccgccttttcacttattgctaggagtgattgtga
                     A - T
                     C   C
                     G - C
                     A   C
                     G + T
                     T - A
                     G - C          T A
                    T     T G T C C     A
      C G A        A      | | + | |     A
    T       C G C G       A C G G G     C
    T       | | | |                 T T
    G       G C G C
      G T A        G     ATGTC
                    T - A
                    T - A
                    T - A
                    G - C
                    T - A
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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