The detailed information of tRNA gene sequence


Sequence ID>R05300027
Genome IDAP008208
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr02
Start position on genome 16258311
End posion on genome 16258235
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
gtttttgactcttcgtctccttcggctcgaagcaaagaaaaaaaaaagggtctggctgtacataagattaatataatttatagctaacgtttggcacaaT
tRNA gene sequence 
GTGGCTGTAGTTTAGTGGTGAGAATTCTACGTTGTGGCCGTAGAGACCTGGGCTCGAATC
CCAGCAGCCACACTA
Downstream region at tRNA end position 
Tcattttcttttagtttgttttttatatcattttcttttagtttgttttttatttttatagttggcttggacaagtttagttttgtctttaataactgtt
Secondary structure (Cloverleaf model)
>R05300027	His	GTG
                   T      ACTA Tcattttcttttagtttgttttttatatcattttcttttagtttgttttttatttttatagttggcttggacaagtttagttttgtctttaataactgtt
                     G - C
                     T - A
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     G A C C C     A
      T G A        A      | | | | |     G
    G       T T T G       C T G G G     C
    G       + | | +                 C T
    T       G A A T
      G A          T     AGAC
                    C - G
                    T - A
                    A - T
                    C - G
                    G - C
                  T       C
                  T       G
                    G T G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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