The detailed information of tRNA gene sequence


Sequence ID>R05300045
Genome IDAP008209
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr03
Start position on genome 5538787
End posion on genome 5538713
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cctatcacccctaaacgaacgatgccttagtgttcttagccgaatgattagttatagagcattgtttaaattagaaacgtttaacatcctaaacaacacc
tRNA gene sequence 
ATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAAC
CTGGCTCTGATAATT
Downstream region at tRNA end position 
aatttttgacttcttaatcgtctaattttattttatttattcatcttttttgaatcgtctaaatttattttatttattcatcttttttgaattattgctt
Secondary structure (Cloverleaf model)
>R05300045	Met	CAT
                   c      AATT aatttttgacttcttaatcgtctaattttattttatttattcatcttttttgaatcgtctaaatttattttatttattcatcttttttgaattattgctt
                     A - T
                     T - A
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C          A A
                    T     G G T C C     A
        G A        G      | | | | |     G
      C     C G C G       C C A G G     C
      G     | | | +                 A T
      G     G C G T
        A A        G     AGGTC
                    G - C
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  C       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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