The detailed information of tRNA gene sequence


Sequence ID>R05300079
Genome IDAP008215
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr09
Start position on genome 22222685
End posion on genome 22222608
Amino Acid Ala
Anticodon AGC
Upstream region at tRNA start position 
tgcgcccgtgtgactttcattcgatccactgcctttctgcctacatttggtctttgtgttgtccaatagtagaatgaactaataagaaatgaccccaacT
tRNA gene sequence 
GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA
CCCCGCATCTCCATTT
Downstream region at tRNA end position 
Aaccttttttttctggtttgccagaatcaactaattccaatcttctggtgtatcttggattcttgacaagttcagatagccatggattcagtaaatgaca
Secondary structure (Cloverleaf model)
>R05300079	Ala	AGC
                   T      ATTT Aaccttttttttctggtttgccagaatcaactaattccaatcttctggtgtatcttggattcttgacaagttcagatagccatggattcagtaaatgaca
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     G - C          A T
                    T     G C C C C     A
      A G A        A      | | | | |     G
    T       C T C G       C G G G G     C
    G       | | | |                 A T
    G       G A G C
      T A          G     AGGTA
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       A
                    A G C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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