The detailed information of tRNA gene sequence


Sequence ID>R05300086
Genome IDAP008216
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr10
Start position on genome 16779249
End posion on genome 16779176
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
aaaaagtaagtagaattagatttaagataaaagaaagttagttttagtaagaaacgtggatgaatacttgctattttctcgattttagatcgtatttttt
tRNA gene sequence 
GGCAGCATGGCCAAGCGGTAAGGCAGGGGACTGCAAATCCTTTATCCCCAGTTCAAATCT
GGGTACCGCCTGAT
Downstream region at tRNA end position 
caataaaatacttaggcttatagtacttatccaaatcgacaaatttgcaccccgcataagttggggcaagagaataacgaggcttggcgatactggattt
Secondary structure (Cloverleaf model)
>R05300086	Cys	GCA
                   t      TGAT caataaaatacttaggcttatagtacttatccaaatcgacaaatttgcaccccgcataagttggggcaagagaataacgaggcttggcgatactggattt
                     G - C
                     G - C
                     C - G
                     A   C
                     G - C
                     C   A
                     A - T          T A
                    T     G G G T C     A
        G A        G      | | | | |     A
      C     A C C G       C C C A G     C
      G       | | |                 T T
      G     A G G C
        T A        A     TATC
                    G + T
                    G + T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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