The detailed information of tRNA gene sequence


Sequence ID>R05900004
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome 80
Start position on genome 33712823
End posion on genome 33712738
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
atatcgctctcattatgtatcatgaaatctgttgcgaggtttggggttgctagtgtgtatagaacgtacaaaaaattatttagacgaacatgtgcagaaa
tRNA gene sequence 
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGTCGCTGGTTCGAAT
CCGGCAGGTCGGAatt
Downstream region at tRNA end position 
atttttttttctttttttttctttttagtccttccaagtgaaacctaagttcccctcttctctgttgtcttcaatttgagatgtgttattattattattt
Secondary structure (Cloverleaf model)
>R05900004	Tyr	GTA
                   a      Aatt atttttttttctttttttttctttttagtccttccaagtgaaacctaagttcccctcttctctgttgtcttcaatttgagatgtgttattattattattt
                     C - G
                     C - G
                     G - C
                     A - T
                     C - G
                     C - G
                     T - A          T A
                    T     C G G C C     A
      T G A        A      | | + | |     G
    T       C T C G       G C T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    G + T
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T A
intron: position=38, length=13 (in A-loop)
TATGTGCAGATTA
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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