The detailed information of tRNA gene sequence


Sequence ID>R05900007
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome 60
Start position on genome 35292500
End posion on genome 35291870
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gaaccgctagactacatagagtaatgaattcaacgattcaaaaaaaactaacagatggaggaaattgcacaaggaatcctggtctcaaagaaaaagaaaT
tRNA gene sequence 
GGGGATATGGCGAAATCGGTAGACGCTACGGACTTAAAATCCGTCGACTTTCTAAGTCGT
GAGGGTTCAAGTCCCTCTATCCCCAAAC
Downstream region at tRNA end position 
Cctcttttattccctaactctagtatttatcctgttttttttattaataggtttaagattcaatggaatacatttcttttttattatagtatcggcaagg
Secondary structure (Cloverleaf model)
>R05900007	Leu	TAA
                   T      AAAC Cctcttttattccctaactctagtatttatcctgttttttttattaataggtttaagattcaatggaatacatttcttttttattatagtatcggcaagg
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    C       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTCTAAGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=541 (in A-loop)
GATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGCAACTTCCAAATTCAGAGAAACCCTGGAATTA
AAAAAGGGGCAATCCTGAGCCAAATCCATGTTTTGAGAAAACAAGCGGTTCTCGAACTAGAACCCAAAGG
AAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACGTTGTGTTGCTAGC
GGAACTCCCTTCTAAATTAGGGAAAGAAGGGCTTTCGAAATCTAATACACACGTATAGATACTGGCATAG
CAAACGATTAATCACAGAACTCATATCATAATATAGGTTCTTTAATTCTTTTTTAAAATGAAAATAGGAA
TGATTATGAAATAGAAAATTCATAATTTTTTTAGAATTGTTGTGAATCCATTCCAATCGAATATTGAGTA
ATCAAATCCTTCAATTCATAGTTTTCGAAATCTTTTTAAAAGCGGATTAATCGGACGAGGATAAAGAGAG
AGTCCCATTCTACATGTCAATACTGACAACAATGAAATTTCTAGTAAAAGG
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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