The detailed information of tRNA gene sequence


Sequence ID>R05900008
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome 65
Start position on genome 35302189
End posion on genome 35301435
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gtgaggaaccttctctgtttcattaactaagagggaattagcatctttctcgaatggctacccttgacaaagggtagcgttggtatcagaatttacatgA
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAAGTGTGATTTCGACTATAACCCCTAGCCTTCCAAGCTA
ACGATGCGGGTTCGATTCCCGCTACCCGCTCCA
Downstream region at tRNA end position 
Ttctgtataaaataactattctatttgtctagacatggtagaggcctgtattcaacctttttcgtccaccggtttccagcgctccagagcggagtagagc
Secondary structure (Cloverleaf model)
>R05900008	Ser	CGA
                   A      TCCA Ttctgtataaaataactattctatttgtctagacatggtagaggcctgtattcaacctttttcgtccaccggtttccagcgctccagagcggagtagagc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
        G A        A      | | | | |     G
      T     T T T G       G C G G G     C
      G     | | |                   T T
      G     A A A G
        T A        T     CCCTAGCCTTCCAAGCTAACGAT
                    G - C
                    T - A
                    G   A
                    A - T
                    T - A
                  T*      T
                  T       C
                    C G A
intron: position=33, length=660 (in A-loop)
CGTTCTATTAATAACTGAATTTGAAATGATATACTTAAGGCGTCCTTAAGGTTTTTTATATTCCGATGAA
AACTTTAGTTCTTAGAAAGGATTTACTCCTTTTTCTCTCAATAGCATATTGAGGAAGAATATGCATTTTC
GCGATTTGTACCCAAAGACTAATTGAAATTGCATCCAAAAAACAAATAGGATTTGGATTATGAGTACAGA
GTCGCGAAGCATAATTTTGCATTGGATTAAGGATTCCAATTTTTAAAATATGAGTAAAGGATCTATGGAT
AAAGATACAAAAAAATTTATTTCCAATCGTAACTAAATCTTCTTTTGTTAAAAAAGGAAATGGAAGCCAA
ATAGCTAAAAAACGGTAGTTTTGGTTTACTAGAACCATCAGCATATTGTTTCAGCTCGGTGGAAACCCAA
TTCTTTTCTCAGGATCTCTTAAATGAAATTAGGGAACGAAGTAATTAGATTAGATAGATTTAGGCAAATT
TCTATCTCCTACTCTTTAGGGATCATCTAGAAAGCAGAGAGCCTTGGTTCCATTCAGACAAAAAAGCTGA
CTTAGATGTTAAGTGGTGAGAATACCCATAAAGGAGCCGAATGAAATCAAAATTTCATGTTCGGTTTTGA
ATTAGAGACGTTAATAATAATCAACCAACG
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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