The detailed information of tRNA gene sequence


Sequence ID>AD01000294
Genome IDNC_003074
Search identical group
Phylum/ClassPlant
SpeciesArabidopsis thaliana
Chromosome chr3
Start position on genome 19409439
End posion on genome 19409367
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gttaccaaatttctaaagcaataacaaagaaataagctactatatgtagaaatcttaatgtagatttagatagcttaatatagatatgatgtacaacaaa
tRNA gene sequence 
GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCACCGGTTCGAACC
CGGTTGGGCCCTCat
Downstream region at tRNA end position 
tttttttaaatttttttccataaacctctgccaaatcttaagttatactattctttgataataattatcaaaagaagttcaaaactttataatgcctata
Secondary structure (Cloverleaf model)
>AD01000294	Cys	GCA
                   a      TCat tttttttaaatttttttccataaacctctgccaaatcttaagttatactattctttgataataattatcaaaagaagttcaaaactttataatgcctata
                     G - C
                     G - C
                     G - C
                     T + G
                     C - G
                     C - G
                     A - T          C A
                    T     T G G C C     A
        G A        A      | | | | |     G
      T     C T C G       A C C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     AGGTC
                    T + G
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[TAIR]

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