The detailed information of tRNA gene sequence


Sequence ID>AD08000006
Genome IDNC_003070
Search identical group
Phylum/ClassPlant
SpeciesArabidopsis thaliana
Chromosome chr1
Start position on genome 21299543
End posion on genome 21299629
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
aaatttttaatagagactcactatgagtatgctaacttaatacaaatcattgtgttgatagaatattttgatcagtacacatgcatgaaatagaatacaT
tRNA gene sequence 
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACAGTAGATCCTTAGGTCACAGGTTCGAAT
CCGGTAGGTCGGAttt
Downstream region at tRNA end position 
gctcccacatgagagctttttatttttcttttgttgtgacattaaggtgtttgaattttataataaacggttatatgcataattatattcaaatgcttgt
Secondary structure (Cloverleaf model)
>AD08000006	Tyr	GTA
                   T      Attt gctcccacatgagagctttttatttttcttttgttgtgacattaaggtgtttgaattttataataaacggttatatgcataattatattcaaatgcttgt
                     C - G
                     C - G
                     G - C
                     A - T
                     C - G
                     C - G
                     T - A          T A
                    T     T G G C C     A
      T G A        A      | |   | |     G
    T       C T C G       A C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    G + T
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  A       G *
                    G T A
intron: position=38, length=12 (in A-loop)
AAGACGCAGATT
Intron
Comment/Decision
Genome/Seq. Info.[TAIR]

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