The detailed information of tRNA gene sequence


Sequence ID>C141000343
Genome IDAP014507
Search identical group
Phylum/ClassThermotogota
SpeciesPseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
Start position on genome 1764071
End posion on genome 1764159
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aaaataaagc
tRNA gene sequence 
GGAGGCGTGTCCGAATTGGCTAAGGAGCCGGTCTCGAAAATCGGTGGGCTTTTAAGCCCT
TGTGGGTTCGAGTCCCACCGCCTCCGCCA
Downstream region at tRNA end position 
gtttttatag
Secondary structure (Cloverleaf model)
>C141000343	Ser	CGA
                   c      GCCA gtttttatag
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     C A C C C     A
      T A A        G      | | | | |     G
    T       G C C T       G T G G G     C
    G         | | |                 T T
    G       A G G A
      C T A        G     TGGGCTTTTAAGCCCTT
                    C - G
                    C - G
                    G - C
                    G + T
                    T - A
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.-

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