The detailed information of tRNA gene sequence


Sequence ID>C141000379
Genome IDAP014508
Search identical group
Phylum/ClassThermotogota
SpeciesPseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
Start position on genome 1785392
End posion on genome 1785468
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
caaatgacgc
tRNA gene sequence 
AGGGCCGTAGCTCAACTGGGTAGAGCGCCGGTCTCCAAAATCGGCGGTTGCAGGTTCGAG
TCCTGCCGGCCCTGCCA
Downstream region at tRNA end position 
attttttgcg
Secondary structure (Cloverleaf model)
>C141000379	Trp	CCA
                   c      GCCA attttttgcg
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     C G T C C     A
      C A A        A      | | | | |     G
    T       C T C G       G C A G G     C
    G       | | | |                 T T
    G       G A G C
      G T A        G     CGGTT
                    C - G
                    C - G
                    G - C
                    G + T
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.-

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