The detailed information of tRNA gene sequence


Sequence ID>PHG14600093
Genome IDKC292026
Search identical group
Phylum/Classunclassified archaeal dsDNA viruses
SpeciesHalovirus HGTV-1 Gb1 (KC292026)
Start position on genome 49328
End posion on genome 49226
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cacgcaactt
tRNA gene sequence 
GGGCCGCTGGTCTAATGGCAAGACACTTGCTTTGCAAGCAAGGAACTCCCGGTTCGAATC
CGGGGCGGTCCActc
Downstream region at tRNA end position 
caacgatgaa
Secondary structure (Cloverleaf model)
>PHG14600093	Ala	TGC
                   t      Actc caacgatgaa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     C - G          T A
                    T     G G G C C     A
        A A        G      | | | | |     G
      T     T C T G       C C C G G     C
      G     | | | |                 T T
      G     A G A C
        C A        A     GAACT
                    C - G
                    T - A
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A *
                    T G C
intron: position=38, length=31 (in A-loop)
AGAGTTGAAGTTACGGCTTCTGCTCCAAATT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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