The detailed information of tRNA gene sequence


Sequence ID>W1910731331
Genome IDMHDQ01000247
Search identical group
Phylum/ClassNitrospinota
SpeciesNitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 [MHDQ]
Start position on genome 5782
End posion on genome 5686
Amino Acid Sec
Anticodon TCA
Upstream region at tRNA start position 
atgagaaagc
tRNA gene sequence 
GGAAGCGCATAGGGGCCGGTGTCTCTCCTGGACTTCAAATCCAGTGACGGGCTCTAGTAA
AGTTCGTGGTGGGTTCGACTCCCACGCGCTTCCGCCA
Downstream region at tRNA end position 
caaacggtta
Secondary structure (Cloverleaf model)
>W1910731331	Sec	TCA
                   c      GCCA caaacggtta
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     G - C
                     C - G          T C
                    A     C A C C C     A
      C C G        T      | | | | |     G
    G       G G G A       G T G G G     C
    G       | + | |                 T T
    T       C T C T
      G T          C     TGACGGGCTCTAGTAAAGTTCGTG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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