The detailed information of tRNA gene sequence


Sequence ID>C09102617
Genome IDCP001226
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesCandidatus Hodgkinia cicadicola Dsem [CP001226]
Start position on genome 46416
End posion on genome 46488
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
catctttcgc
tRNA gene sequence 
tGTGGGCATAGCTTAAGCGGTAAAGCCGCGGTCTTCAAAACCGCAGTCACGGGTTCGAGT
CCTGTTGTCCTCGCgcg
Downstream region at tRNA end position 
ctcgtctttg
Secondary structure (Cloverleaf model)
>C09102617	SeC	TCA
                   c      Cgcg ctcgtctttg
                     t + G
                     G - C
                     T   T
                     G - C
                     G - C
                     G + T
                     C - G
                     A - T          T G
                    T     T G T C C     A
      G A A        A      | | + | |     G
    C       T T C G       A C G G G     C
    G       | | | |                 T T
    G       A A G C
      T A          C     AGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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