The detailed information of tRNA gene sequence


Sequence ID>C09108127
Genome IDCP001196
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesAfipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
Start position on genome 1138480
End posion on genome 1138575
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
cgaagctaac
tRNA gene sequence 
GGAAGAGCATCGTTCCCGGTGGGGCGTCCGGACTTCAAATCCGGGAAGGGCCGCGAGCCG
GTCCTTGGTGGGTTCGACTCCCATTCTCTTCCGCCA
Downstream region at tRNA end position 
aatcccctct
Secondary structure (Cloverleaf model)
>C09108127	SeC	TCA
                   c      GCCA aatcccctct
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     A - T
                     G - C
                     C   T          T C
                    A     T A C C C     A
      C C C        T      + | | | |     G
    G       T T G C       G T G G G     C
    G       + + | |                 T T
    T       G G C G
      G G          T     GAAGGGCCGCGAGCCGGTCCTTG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.-

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