The detailed information of tRNA gene sequence


Sequence ID>CHL090800020
Genome IDAJ271079
Search identical group
Phylum/ClassViridiplantae
SpeciesOenothera elata subsp. hookeri
Start position on genome 17261
End posion on genome 16658
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
atactacaag
tRNA gene sequence 
GGGGATATGGCGAAATTGGTAGACGCTACGGACTTAAAATCCGTCGACTTTAAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCAaaa
Downstream region at tRNA end position 
aaagatcgtt
Secondary structure (Cloverleaf model)
>CHL090800020	Leu	TAA
                   g      Aaaa aaagatcgtt
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTAAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=519 (in A-loop)
AATTGGATTGAGCCTTGGTATGGAAACCTACTAAGTGACAACTTTCAAATTCAGAGAAACCCGGGAATGA
AAAATGGGCAATCCTGAGCCAAATCCTATTTTACGAAAACCAACACCGGGGGTTTAGAAAGCGAGAAAAA
AAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTTGATCGCGTTGTTGATAA
AGGAATCAATCCTTCTATCAAAACTCGAGAAAGGATGAAAGAGAAACCTATATACATATGTCGTGAATAC
TCTCTCAAATGATTAATGATTTGAGCTTAATGACGGCGCGAATCACTTTTTTCTGTTTTTTATATGAAAA
AAGAATTGTTTGTTGCGAATCAATTCGAAGTTGAAGGAAGAATCGAATATTGATTGAGTAAATCCCTTAC
TCCACGAATCTTTTCAAGAACTGATTAATCGGATGAGAATAAAGATAGAGTCCCATTCTACATGTCAATA
CCGACAACAATGAAATTTAGAGTAAGAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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