The detailed information of tRNA gene sequence


Sequence ID>CHL090800027
Genome IDAJ428413
Search identical group
Phylum/ClassViridiplantae
SpeciesCalycanthus floridus var. glaucus
Start position on genome 48194
End posion on genome 48601
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ataacataaa
tRNA gene sequence 
GGGGATATGGCGAAATTGGTAGACGCTACGGACTTAAAATCCGTCGACTTTAGAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCataa
Downstream region at tRNA end position 
aagaaaaagt
Secondary structure (Cloverleaf model)
>CHL090800027	Leu	TAA
                   a      ataa aagaaaaagt
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTAGAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=323 (in A-loop)
GATTGGATTGAGCCTTGGTATGGAAACCTACTAAGTGATAGCTTCCAAATTCAGAGAAACCCTGGAATGA
AAAATGGGCAATCCTGAGCCAAATCCTGTTTTCGGAAAAACAAGGGTTCAGAAAGCGAGAATCAAAAAAG
GATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATGGAAAAGAATTGAATATTCAGTGATCAAATC
ATTCATTCCCCGGTCTGATGGATCTTTTGAAGAACTGATTAATCGGACGAGAATAAAGATAGAGTCCCAC
TCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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