The detailed information of tRNA gene sequence


Sequence ID>CHL090800032
Genome IDAJ879453
Search identical group
Phylum/ClassViridiplantae
SpeciesAcorus calamus
Start position on genome 4288
End posion on genome 1715
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttttttatcT
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATac
Downstream region at tRNA end position 
gtaaaatcga
Secondary structure (Cloverleaf model)
>CHL090800032	Lys	TTT
                   T      ATac gtaaaatcga
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2500 (in A-loop)
GTGCGGCTATGATCTTTTACACATTTGGATGAAGCAACGAATTCGTCCAGACTATTGGTAGAGTTTAATA
AGACCACGACTGATCCTTAAAGGGAATGAAGGGAAAAAATAGCATGTCGTATTAATGAAGAACTCTGAGA
ATACTTCATCCTTACCGGATCGATATAAAAATCGTTTTGTTTGATTTTTGGAACATGACAAAATCAATTC
GCGGTTGGAGTTGGGTCGAGTGAATAAATGGATAGAGCCCCGTGGCTCCAATTCTAAGGAAAGAAAAAGA
AACGAGCTTATGTTCTTAATTCGAATGATTACCCAATCTAATTAGACGTTAAAAATAAATTAGTGCCTGA
TGCGGGAAAGGGTTCTCTTGTGAGTGGATCATTGATTCCTTTTTGAATCCTAACTATTCCATATTATAGA
GTGGAGACGAATGTGTAGAAGAACCGGTATACTGATAGAGATAAATTTTTCCAAAGTCAAAAGAGCGATT
GGGTTGCAAAAATAAAAGATTTCTGACCATCTCGTGTAACTATAACGAACACAAACTAGTTGAATGCAAA
AAGAGAGGAAGAAGGTCTGTTGATTGGACTCCCCGTCTCCGTGGTATTCGTTTTTTTCTATACCGCGTTC
TGACCATATCGCACTATGTATCATTTGATAATCCAAGAAATTCTTCCTGCGTTTAGTTCAATCAAATAAA
ATTTCAAATGGAAGAATTCAAAGTCTATTTCGAAAAAGATGGGTCTCGTCAACAATACTTCCTATATCCA
CTTCTCTTTCAGGAGTACATCTACGCACTTGCTCATAATCATGTTTTAAATGGATTGATTTTTTACGAAT
CCTCGGAAAATTTCGTTTATGATAATAAATTTAGTTTAATAATTGTAAAACGTTTAATTACTCAAATGTA
TCAACAGAATTCTTTGAGTAATTTGGTTAATGATTCTAACCGAAATCGATTAGTTCGGCAAAACAAGAAT
TTTTATTATCAAACGATATTAGAGGGTTTTTCAGTCATTATGGAAATTCCATTCTCCATAATATTTTTAT
CTTCCGTTGAAGAAAAAAAAGCAAAAATACCAAAAATTCAGAATTTACGATCTATTCATGCAACATTTCC
CTTTTTAGAAGACAAATTATCACATTTAAATCATGTATCAGATATATTAATACCCTATCCCATCCATCTC
GAAATCCTGGTTCAAGTTCTGCAAGGCTGGATACAAGATGTTCCGTCTTTACATTTATTGCGGTTCTTTC
TCCATGAGTTTCATAATTGGAATAGTCTCATTACTCCAAAGAAATCCATTTCTTTTCTTTTTTCAAAGGG
GAATCAAAGACTCTTCTTGTTCTTATATAATTCTTATGTATTTGAGTGTGAATCCGCATTAGTCTTTCTC
CGTAAACAATCCTTTTATTTACGATCAACATCTTTTGGAACCTTTGTTGAGCGAACACATTTCTATGGAA
AAATAGAGCATATTGTAGTAGTGCGTAGGAAGAATTTTCAAAAGGCCTTATCTTTGTTCAAAGATCCTTT
CATCCATTATATCCGATATAAAGGAAAATCAATTCTGGCTTCAAAGGGGACTCATTTTCTGATGAAGAAA
TGGAAATATCACCTTCTAAATTTCTGGCAATGTCATTTTGACTTTTGGTCTCAACCGCATAGGATTCATA
TAAACCAATTATCAAATCATTCTTTCTATTTTATGGGCTATCTGTCAAGTGTACGAATCAATTTTTCGAC
GGTAAGGAGTCAAATGCTAGAGAGTTCATTTCTAATGGATACTCCTACTAAAAAATTCGATACTATAGTC
CCAATTATTCCTCTAATCGGATCATTGGCTAAAGCTAAGTTTTGTAACGTATCGGGGCATCCTGTTAGTA
AGCCGGTCTGGGCTGATTTGTCAGATGCTGATATTATTGATCGATTTGGACGAATATGTAGAAATCTTTC
TCATTATCACAGTGGATCCTCAAAAAAACAGAGTTTGTATCGAGTAAAGTATATACTTCGCCTTTCGTGT
GCGAGAACTTTGGCCCGTAAACATAAAAGTACAGTGCGCGCTTTTTTCAAACGATTAGGTTCAGAATTCT
TAGAAGAATTCTTTACGGATAAAGAACAAGTTCTTTCTTTGATCTTCCCTTCCCTTCGTTCACCTTCACA
CAGGGTCCATAAAGGAGAACGTATTTGGTATTTGGATATTATCCGTATCAATGACCTGGTGAATAATTCA
TGATTTGTCATGGGACTTTTCTAATAAATGGAATAGAAATGATCTATAAATAAATGATGAAGAGACAAAA
ATTATCATGTATTTGCATTCTGAAATGCTTATAGAGTAGTGGTTGAATCAACTGAGTATTCAAGTTTCTT
CCTTCTAGGAAACTAAGTTTTAGATGTATACATAGGGAAAGTCGTGTGCAATGAAAAATGCAAGCACGAT
TTGGGGAGGGATCCTTTTAGCCTATTGCAAAAGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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