The detailed information of tRNA gene sequence


Sequence ID>CHL090800047
Genome IDAP004638
Search identical group
Phylum/ClassViridiplantae
SpeciesPsilotum nudum
Start position on genome 52968
End posion on genome 52356
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
gttagaaaga
tRNA gene sequence 
AGGGCTATAGCTCAGTGGTAGAGCACCTCGTTTTTTTTCCGAGAAAGTCTACGGTTCGAA
TCCGTATAGCCCTAatt
Downstream region at tRNA end position 
ctcatgatca
Secondary structure (Cloverleaf model)
>CHL090800047	Lys	TTT
                   a      Aatt ctcatgatca
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
        G A        A      | | | | |     G
      T     C T C G       T A C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     GAAAGTC
                    C   A
                    C - G
                    T   C
                    C   C
                    G + T
                  T       T
                  T       T
                    T*T T
intron: position=35, length=539 (in A-loop)
ACACGTGCGCCAATGCTTTTCAAGAAAGTTTATCAAGCCTTCCGATTCAAGTATGAAATTAAGATTCATG
TTTTACTCTATCCATAATATCATAAGAAATATTAAGAGAACAATAGCATAACAACAAAAAGTTGAAACTC
CCATAGAGTTTGATGGATAATCCAGTGGATATGGTAAATTGTGAGGTCATTCAATACTAAGGGTGATGGG
GTCAATAGGGGGACCTTAAGATATTCTCTTACTCGCTCCGTGAGCTTTAAGGTGTATAAAGTCTCACACT
TCTTTTACAGGCGATAGAGGCTTAAGCAAATCGAGGCCCAAAAAGTGAACCTATGTCAACATTTCAAAAC
TTCTTGAAAAACTTTGGGATTGGCTTTGGTTATAAACTATTCAAGCACACGGAACCATCTTATTATCCCA
TAGGAGAAGGATGGTGATCAACCAATGTATCTTCTGGTTGGTTAATGAGCCCAATGCAAGAAAAAAGATG
CATGTTGGGTTCTCAAAACAGTTTTAATAATCCAAAGGATATTTTTCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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