The detailed information of tRNA gene sequence


Sequence ID>CHL090800048
Genome IDAP005672
Search identical group
Phylum/ClassViridiplantae
SpeciesPhyscomitrella patens subsp. patens
Start position on genome 28632
End posion on genome 29248
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
aataataaca
tRNA gene sequence 
AGGACTATAGCTCAGCGGTAGAGCACCTCGTTTACACCGAGAATGTCTACGGTTCGATCC
CGTATAGTCCTattt
Downstream region at tRNA end position 
attaaaaaaa
Secondary structure (Cloverleaf model)
>CHL090800048	Val	TAC
                   a      attt attaaaaaaa
                     A - T
                     G - C
                     G - C
                     A - T
                     C - G
                     T - A
                     A - T          C T
                    T     A T G C C     A
        G A        A      | | | | |     G
      C     C T C G       T A C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     ATGTC
                    C   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=545 (in A-loop)
GTGCGCCAATGCTTTTAAAAAATTTATTGGAGTTTCCAATTCACAATAAATAAATTATGTGAAATAATTT
TGTCTTACTTTTCTATTTATAATAAATAAAAAGAACAATAGCATGACAAAAAACTAAATTTAGATTTATT
ATAATAATTTAAATTATATTTTAATTGATTGATATGGTAAAATTTGAACTTATTCAATGCTAAGCATTAT
GAGGATGATACGAGGACCTCGAGATATTCTATTTTTTACTTTAAGAGCTTTAGGGTGTATAAAGTTTTAA
AAATTAAAAAGTAATAGAAATTCATTTTGAGTAAATCTATGCTAAATTAAGCAAACCTACGTCAACATTA
AATTTTTTAAAAAACTTTGGGATTGCTTTAATATTTAAGCACACGGAGCTATTTTAATATTTTAATAAAA
AAAGAATAGCAAACTAACTAAATTATTTATTAGTTAATGAAAGAGCCCAATGCAAAAAAAAAATGCATGT
TGGGTTCATAAAAATAGTTACAACTAAATTAAAAAAAGAAATCTAACTATTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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