The detailed information of tRNA gene sequence


Sequence ID>CHL090800049
Genome IDAP005672
Search identical group
Phylum/ClassViridiplantae
SpeciesPhyscomitrella patens subsp. patens
Start position on genome 31936
End posion on genome 31533
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
acaaaaaaag
tRNA gene sequence 
GGGGGTATGGCGGAATTGGTAGACGCTACGGACTTAAAATCCGTTGGCTTAAGTGACCGT
GAGGGTTCAAGTCCCTCTTCCCCCAaat
Downstream region at tRNA end position 
ttaataaata
Secondary structure (Cloverleaf model)
>CHL090800049	Leu	TAA
                   g      Aaat ttaataaata
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T   T
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     TGGCTTAAGTGACCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=319 (in A-loop)
AAAAAATAATTTGAGCTTTAGTAAAAAAATTTATTAAATGCTAGCTTTCAGATTCAGGGAAACTTAGGTT
GAAAAAAAATATAAGCAATCCTGAGCCAAATCTTTTTTTATCTTAAATAAGATAGGTGCAGAGACTCAAT
GGAAGCTATCCTAACGCATAATTTTTTAAAAATTATATAATTAATTTTAATTTTTTATCCATTAATAAAA
ATTAATTTAAACTAAATTGTTAGTTTTTAATTAAATTAAAAAGTGAGGATAAAGATAGAGTCCAATTTTA
CATGTTAGTTTTAGCAACAATTTAAATTGTAGTAAAAAG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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