The detailed information of tRNA gene sequence


Sequence ID>CHL090800133
Genome IDAY928077
Search identical group
Phylum/ClassViridiplantae
SpeciesZea mays cultivar B73
Start position on genome 53824
End posion on genome 53147
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
atctctgaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACTGTTTGATCTGTTTTACCGAG
AAGGTCTACGGTTCGAATCCGTATAGCCCTAata
Downstream region at tRNA end position 
tatacgtctt
Secondary structure (Cloverleaf model)
>CHL090800133	Val	TAC
                   a      Aata tatacgtctt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        A     GATCTGTTTTACCGAGAAGGTC
                    A - T
                    C   T
                    T   T
                    C - G
                    G + T
                  T       C
                  T       A *
                    T A C
intron: position=38, length=587 (in A-loop)
CGTGCGCCAATGCTTTTCAAGGGAACTTTTTATGCAATGAACATAATTGACCTTGTTGCAAAATCAATGT
CTTACTTCATGGATTCGAAAGAATAGAAGAACAGTAGCCTGACAATGACAAACAGCTGGTTCAGTCCGAT
TCAGGTGCCAATTAAGGTGCTTACTCAAATAGAACTCCTATTGATTTGCTAGTTGATAAGGTAAATATCC
AGCCCACTCAATGCTAGGCGTAATGAGGATAAGGGCCTCCAAAAAACTTCTTTTCGTTCTATGAACTTTA
AGGTGTATGAAGTCTCATAGTAAACTCTTGCAGCGGAACGATAGAGACTCCATTTCACTTAGGTTGATTT
AATTTAGGCCGGAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGTTCCTAGATA
GATCATAAGACAAATAATCAATCAGAGCACAGGGAGCCATCTTATTATCTTTCCCTAAAGAAAAACTATG
GCGAATTAACTGATCTTTACATTAGTTGATGAAAGAGCCCAATGCAGAAAAATGCATGTTGGGTCTTTGA
AACAGTTCGAATCATTTCGATAATAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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