The detailed information of tRNA gene sequence


Sequence ID>CHL090800139
Genome IDAY958085
Search identical group
Phylum/ClassViridiplantae
SpeciesStaurastrum punctulatum
Start position on genome 68224
End posion on genome 68667
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tttaagtata
tRNA gene sequence 
GGGGGCATGGCGGAATTGGTAGACGCAACGGACTTAAAATCCGTGGATCCTTTAGATTAT
GAGGGTTCAAGTCCCTCTGCCCCCaaaa
Downstream region at tRNA end position 
aaagcactag
Secondary structure (Cloverleaf model)
>CHL090800139	Leu	TAA
                   a      aaaa aaagcactag
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     GGATCCTTTAGATTAT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=359 (in A-loop)
AACTATTTTGAGCCCTGGTAGGGAAACTTAACAGGTGAAAGCTTTCAAATTCAGGGAAACCTAGCATGAA
AGTTGAAAAGGCAATCCTGAGCCAAATCCTAAAACTTTTAAGTTTTTAGGATAGGTGCAGAGACTCAATG
GAAGCTATTCTAACGAAAGTAGATTTACCCCTTTTCCTACAAAGTATATGAGATTACACAGAAGGGAGTA
AAATTCAAAAAAGTTTATTTTTTGAAAACTTATAAAATAACAAGAATAAAGAGAGAGTCCATCCTATAGA
TTCGACCTTAGGATCTCTATTTTTATAAGAGATCCCGTAAAAAAAGGAAAAAAATCACAATGAAATTTGT
AATAGGACG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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