The detailed information of tRNA gene sequence


Sequence ID>CHL090800147
Genome IDDQ229107
Search identical group
Phylum/ClassViridiplantae
SpeciesChara vulgaris
Start position on genome 92487
End posion on genome 92997
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
acagtgctaa
tRNA gene sequence 
GGGGGTATGGCGGAATTGGTATACGCTACGGACTTAAAATCCGTTGGTTTTAAGCCATGA
GGGTTCGATCCCCTCTACCCCCAtgt
Downstream region at tRNA end position 
ggatgataga
Secondary structure (Cloverleaf model)
>CHL090800147	Leu	TAA
                   a      Atgt ggatgataga
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          C T
                    T     C T C C C     A
      T A A        G      | | | | |     G
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A T        T     TGGTTTTAAGCCAT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=427 (in A-loop)
AAAAGGAAATTATAATTGAGCCTTTTTAAGAAAACTTATTAAGTGATTGCTTTCAAATTCAGGGAAATCT
GGGATGTAAATCGTACAGACAATCCTGAGCCAAGTCTGATTCGATTCAGTTTAATAATCAATAAGGTATT
ATTGGAGTTTCAGAAAGGTGCAGAGACTCTATGGAAGCTATCCTAATGTAATGTAAATAGATTTTTCAAC
TATAATGTGATTTTGCATCATTTTTTGATTCTTAAACAATCAAAAAATCTTTATTCACTAAAATATTTAT
TGTAAAAGAATATTCTTAAAAATATTCTTTTTAGAATATTTTTATTTTTATCGTAATTTCTGTGAATAGA
AAGAATCTTACAAGGATAAAGAGAGAGTCCAATCTTGCTAGCTCAAAGAGAACAATAATGTAAATTAAAG
TAAGATG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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