The detailed information of tRNA gene sequence


Sequence ID>CHL090800155
Genome IDDQ345959
Search identical group
Phylum/ClassViridiplantae
SpeciesGossypium hirsutum
Start position on genome 50247
End posion on genome 50908
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
agacacaaaa
tRNA gene sequence 
GGGGATATGGCGAAATTGGTAGACGCTACGGACTTAAAATCCGTCGACTTTAAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCaccc
Downstream region at tRNA end position 
caaaaagccc
Secondary structure (Cloverleaf model)
>CHL090800155	Leu	TAA
                   a      accc caaaaagccc
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTAAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=577 (in A-loop)
AATTGGATTGAGCCTTGGTATGGAAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATGA
AAAATGGGCAATCCTGAGCCAAATCCTATTATTTTATTATTTTACGAAAATAAACATGAACAAAGGTTCA
GCAAGCGAGAATAAGAAAAAAAGGAAAGGATAGGTGCAGAGACTCAATGGAAGCTATTCTAACAAATGGG
GTTGACTGTTGGTAAAGGAATCCTTATATCGAATATCGAAACTCTAGAAAGGATGCAAGATATACCTATT
TTTTTTATAGGTATACTAATGAAAAACTATCTCAAAAAAGACGAACCGAACCCGTATTTTTTTTTATTTC
TATTATATGCAATATCAATTTATATGAAAATATGAAAAATAAAAAGAATTGTTGTGAATCGATTCCAAGT
TGAAGAAAGAATCGAATAGAATAGTCATTAATCAAATCATTCACTCCATAGTCTGATAAATCTTTTGAAA
AACTGATTAATCGGACGAGAATAAAGATAGAGTCCCGTTCTACATGTCAATATCAATACCGACAACAATG
AAATTTATAGTAAGAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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