The detailed information of tRNA gene sequence


Sequence ID>CHL090800159
Genome IDDQ347958
Search identical group
Phylum/ClassViridiplantae
SpeciesSolanum bulbocastanum
Start position on genome 53426
End posion on genome 52783
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
acaagcacta
tRNA gene sequence 
AGGGCTATAGCTCAGTTGGTAGAGCAACTCGTTTACAATAAGTTTGATCTGTTTTACCGA
GAAGGTCTACGGTTCGAGTCCGTATAGCCCTAtaa
Downstream region at tRNA end position 
aaatgaaaaa
Secondary structure (Cloverleaf model)
>CHL090800159	Val	TAC
                   a      Ataa aaatgaaaaa
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     TTGATCTGTTTTACCGAGAAGGTC
                    A - T
                    C - G
                    T - A
                    C   A
                    G + T
                  T       A
                  T       A
                    T A C *
intron: position=37, length=552 (in A-loop)
ACGCGCGCCAATGTTTTTCAAGGGAGTTCATCATACAATCAGAAAAATTGATCTTGTTGAGAAATCGATG
TCTTACTCCATAACTTTGAGGGAACCATAGCCTGACAAAGGGTTCGGTCCAATTTGGACGCCCATTTAGG
AGGTGCCAAACAGACCCCATCATTGATTTGAGATCTTGATAAGGTGAATACCCAGTCTATTCAATGCTAG
GCATAATGAGTATAAGGACCTCAAAAAAATCTCTTTTCGTCATATGAACTTTAAGGTGTATGAAGTTTCA
TATTTGATTTTTAAGCAGAACGATAGAGACTTCATTTAACTTAGGTTGATCTAGGCCAGAGACAGACCTA
CGTCAAGATAATCCCACCTTTGAAACACTTTGGTAATGCTCCCAAATAATGAATCAGAGCACATGGAGCC
ATTTCCTTATCTTTTTTTCTGTCAAGAAAAAAAATGGCAGACTAACTGATATTTAGATCAGTTAATGAAG
GAGCCCAATGCAAAAAAAAATGCATGTTGGGTCTTTGAAACAGTTCAGATCATTTTAATAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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