The detailed information of tRNA gene sequence


Sequence ID>CHL090800182
Genome IDDQ383816
Search identical group
Phylum/ClassViridiplantae
SpeciesLactuca sativa cultivar Salinas
Start position on genome 4374
End posion on genome 1765
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttttctattT
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCATtg
Downstream region at tRNA end position 
tcatagtgaa
Secondary structure (Cloverleaf model)
>CHL090800182	Lys	TTT
                   T      ATtg tcatagtgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2536 (in A-loop)
GTGCGGCTAGGATCTTTTACACATTAGATGAAGCGAGGGATTCATCCATACCATCGGTAAAGTTTGGAAG
ACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAATAGCATGTCGTATCAATTAAGAGTTCTGAGAAT
AATTTATTCCGGCTCGGTACAAAACCTTCTTTAAATTAGTGAAAGGGAGCAAACCGAAGTCAATTTCAAG
TTGGGTCGAATTAATAAATGGATAGGGCCCCGCGGCTTCAATTAATTTCATTTTGATTATAGGGAAAGAA
AAAGCAACGAGCTTCCGTTCTTAATTTGAATGATTACCCGATCTAATTAGACGTTAAAAAAATATTAGTG
CCCAATACGGGAAGGCTTTCTCCCAGGAAGGAATGTATTCTTGATTTTTTAATGAATCCTAAATATTACC
ATTCTCCATTCCATAATGGAGATGTGTGTGTATAAGAAACAGTATATTGATAAAAAATTTCCAAAATCAA
AAGAGCGATTGGGTTGAAAAAAAAGTAAAGGATTTCTAATCATCTTGTTATCCTATAATGAAAACGAACA
TAAATATTGAAATTGAAATGGAAAAAGAGAGGCTAGAGAATCTGTTGATAAGTTTATCTGTATCCGAGGT
ATCTATTCGGTTTGTACTATAATACCTTGTTTTGACTGTATCGCACTATGTATCATTTGATAACCCCCAA
AATCCTCTACCTTTCATTTAAATAGAATTTCAAATGGAGAAATTCCAAAGCTATTTAGGGCTAGATAGAT
CTCAACAACACCACTTCTTATATCCACTTATCTTTCAGGAGTATATTTATGTACTTGCTCATGATCATGG
TTTAACTAGATCGATTTTGTTGGAAAATGCAGGTTATGACAATAAATCCAGCTTACTAATTGTGAAACGT
TTAATCAATCGAATGTATCAACAGAATCATTTGATTCTTTCGGTTAATAATTCTAAACAGACTCCATTTT
TGGGGCACAACAAGAATTTTTATTCGCAAGTAATGTCCGAGGTCTCTTCAATCATTATGGAAATTCCATT
GTCTCTGCGATTAATATCTTACCTAGAAAGGAAAGGGGTAGTCAAATCCGATAATTTACGATCAATTCAT
TCAATATTTTCTTTTTTAGAGGACAACTTTTCACATTTAAATTATGTATTAGATATACTAATACCTTACC
CAGCCCATCTGGAAATCTTGGTTCAGGCTCTTCGCTATTGGATAAAAGATGCTTCCTCTTTGCATTTATT
AAGATTCTTTCTCCATGAGTGTCATAATTGGGATAGTCTGATTACTTCAAATTCAAAGAAAGCCAGTTCT
TCTTTTTCAAAAAGAAATCACAGACTATTCTTCTTCCTATATACTTCTCATTTATGTGAATATGAATCCG
GCTTCCTCTTTCTCCGTAACCAATCTTCTCACTTACGATCAACATCTTCTGGAGCCCTTATTGAACGAAT
ATATTTCTATGGAAAAATAGATCATCTTGCAGAAGTCTTTGCCAGGGCTTTTCAAGCGAATTTATGGTTG
TTCAAAGATCCTTTCATGCATTATGTTAGGTATCAAGGAAAATCCATTCTTGGTTCAAAAGGGACGTTTC
TTTTGATGAATAAATGGAAATATTACTTTGTCAATTTCTGGAAATCTTATTTTTACCTGTGGTCTCAACC
AGGAAGGATTTATATAAACCAATTATCCAATCATTCCCTTGACTTTCTGGGTTATCGTTCAAGTGTGCGG
CTAAAGCCTTCAATGGTACGCAGTCAAATGCTAGAAAATGCATTTATAATTGAAAATGCTATTAAGAAGT
TTGAGACTATTGTTCCAATTATGCCTTTGATTGGATCATTGGCTAAATCTAAATTTTGTAATGCATTGGG
GCATCCTATTGGTAAGGCGATTTGGGCCGATTTCTCAGATTCTGATATTATTGACCGCTTTGGGCGTATA
TACAGAAATCTTTCTCATTATCATAGTGGATCTTCAAAAAAAAAGAGTTTGTATCGAGTAAAGTATATAC
TTCGACTTTCTTGTGCTAGAACTTTAGCTCGTAAGCATAAAAGCACTGTACGTGCTTTTTTGAAAAGATT
CGGCTCGGAATTATTAGAAGAATTCTTTACGGAAGAAGAACAAGTTTTTTCCCTGACCTTTCCAAGGGTT
TCTTCCATTTCGCGAAGGTTATCTAGAAGGCGGATTTGGTATTTGGATATTATTTGTATCAATGATTTGG
CCAATCATGAATGATTCGTTATGAAACCTTGTAAATATAAATTTCATCACTAAATAATCTAATAAATAAT
GTAAATAATGAAGAGCTAACAAAAAATTATTTCTTTCTATTCTGAAATGTTGATGTAGTATGTAGTAAGG
ATGAAATCAACTGAGTATTCAATCTTTTCTTGTCTAATGAAGGAACTGAGTTTTAGATGTATACAGAGGG
AAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGGGATTTTTACTTATTTAACTTTAACAAGG
AAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK