The detailed information of tRNA gene sequence


Sequence ID>CHL090800184
Genome IDDQ383816
Search identical group
Phylum/ClassViridiplantae
SpeciesLactuca sativa cultivar Salinas
Start position on genome 47001
End posion on genome 47527
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tctcaaaaag
tRNA gene sequence 
GGGGATATGGCGAAATCGGTAGACGCTACGGACTTAAAATCCGTCGATTTCAAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCaaaa
Downstream region at tRNA end position 
gaccatttgg
Secondary structure (Cloverleaf model)
>CHL090800184	Leu	TAA
                   g      aaaa gaccatttgg
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    C       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGATTTCAAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=442 (in A-loop)
AATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTA
ATAAAAATGGGCAATCCTGAGCCAAATCACGTTTTCCGAAAACAAACAACGGTTCAGAAAGCGAAAATCA
AAAAGGATAGGTGCAGAGACTCGATGGAAGCTGTTCTAACGAATGGAGTTGATTGTCTTACGTTAGTAGA
GGAATCCTTCTATCGAAACTTCAGAAAAGATGAAGGATAAACCTGTATACATACTAGAGAAGAATTGTTG
TCAATTGATTCCATATTGAAGAAAGAATCGAATATTCATTGATCAAACCATTCACTCCATAATCTGATAG
ATCTTTTGAAGAACTGATTAATCGGACGAGAATAAAGATAGAGTCCCGTTCTACATGTCAATACTGGCAA
CAATGAAATTTATAGTAAGAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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