The detailed information of tRNA gene sequence


Sequence ID>CHL090800189
Genome IDDQ386163
Search identical group
Phylum/ClassViridiplantae
SpeciesSolanum tuberosum cultivar Desiree
Start position on genome 4408
End posion on genome 1824
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttcttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tcatatcgaa
Secondary structure (Cloverleaf model)
>CHL090800189	Lys	TTT
                   c      ACta tcatatcgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2512 (in A-loop)
GTGCGGCTAGTGTCTTTTACACATATGGATGAAGTGAGGGATTCGTCCATACTCTCGGTAAAGTTTGGAA
GACCGCGACTGATCCTGAAAGGGAATGAATGGTAAAAATAGCATGTCGTATCAACGGAAAGTTCTGAAAA
TATTTCATTGTTCCTAGATGGGTATAAAACTGTGTTAGAATTCTTGGAACGGAACAAAATAAAGTTGGGT
CGAATGAATAAATGGATAAGGCTGCGGCTTCAATTAAATTATAGGGAAAGAAAAAGCAACGAGCTTTTGT
TCTTAATTTGAATGATTCCCGATCTAATTAGACGTTAAAAATTTATTAGTGCCTGATGCGGGAAGGGTTT
CTTGTCCCATGAGTGGGTTCTCGATTTTTTTAATGAATCCTAACTATTACCATTTTCGATTATGGAGATG
TGTGTAGAAGAAACAGTATATTGATAAAGAAAGTTTTTTCCGAAGTCAAAAGAGCGATTAGGTTGAAAAA
ATAAAGGATTTCTAAACATCTTATTATCCTATAACACTATAACATAGACCAATTAAATGAAACGAAAAAA
AAAAGAGATGATAGAGAATCCGTTGAGAAGTTTACCTGTATCCAAGGTATCTATTCTTACTACAATACTT
TGTTTTAACTGTATCGCACTATGTATCATTTGATAACCCTCAAAATCTTCCATCTTTGGTTCAAATCGAA
TTTCAAATGGAAGAAATCCACAGATATTTACAGCCAGATAGCTCGCAACAACACAACTTCCTATATCCAC
TTATCTTTCAGGAGTATATTTATGCACTTGCTCAGGATCATGGTTTAAATAGAAATAGGTCGATTTTGTT
GGAAAATTCAGGTTATAACAATAAATTGAGTTTCCTAATTGTGAAACGGTTAATTACTCGAATGTATCAA
CAGAATCATTTTATTATTTCGACTAATGATTCTAACAAAAATCCGTTTTTGGGGTGCAACAAGAGTTTGT
ATTCTCAAATGATATCAGAGGGGTTTGCATGTATTGTGGAAATTCCGTTTTCTATACGATTAATATCTTC
TTTATCTTCTTTCGAAGGCAAAAAGATTTTCAAATCTCATAATTTACGATCAATTCATTCAACATTTCCT
TTTTTAGAGGACAATTTTGCACATCTAAATTATGTATTAGATATACTAATACCCTACCCCGTTCATCTGG
AAATCTTGGTTCAAACTCTTCGCTATTGGGTAAAAGATGCCTCTTCTTTACATTTATTACGATTCTTTCT
CCACGAATATTGTAATTTGAATAGTCTTATTACTTCAAAGAAGCCCGGTTACTCCTTTTCAAAAAAAAAT
CAAAGATTCTTCTTCTTCTTATATAATTCTTATGTATATGAATGCGAATCCACTTTCGTCTTTCTACGGA
ACCAATCTTCTCATTTACGATCAACATCTTTTGGAGCCCTTCTTGAACGAATATATTTCTATGGAAAAAT
AGAACGTCTTGTAGAAGTCTTTGCTAAGGATTTTCAGGTTACCCTATGGTTATTCAAGGATCCTTTCATG
CATTATGTTAGGTATGAAGGAAAATCAATTCTGGCTTCAAAAGGGACGTTTCCTTTGATGAATAAATGGA
AATTTTACCTTGTCAATTTTTGGCAATGTCATTTTTCTATGTACTTTCACACAGGAAGGATCCATATAAA
CCAATTATCCAACCATTCCCGTGACTTTATGGGCTATCTTTCAAGTGTGCGACTAAATCATTCAATGGTA
CGTAGTCAAATGTTAGAAAATTCATTTCTAATCAATAATCCAATTAAGAAGTTCGAGACCCTTGTTCCAA
TTATTCCTTTGATTGGATCATTAGCTAAAGCACACTTTTGTACCGTATTAGGGCATCCCATTAGTAAACC
AGTTTGGTCCGATTTATCAGATTCTGATATTATTGACCGATTTGGGCGTATATGCAGAAATCTTTTTCAT
TATTATAGCGGATCTTCCAAAAAAAAGACTTTATATCGAATAAAGTATATACTTCGACTTTCTTGTGCTA
GAACTTTAGCTCGGAAACACAAAAGTACTGTACGCACTTTTTTGAAAAGATCGGGCTCGGAATTATTGGA
AGAATTCTTAACGTCGGAAGAACAAGTTCTTTCTTTGACCTTCCCACGAGCTTCGTCTAGTTTGTGGGGA
GTATATAGAAGTCGGATTTGGTATTTGGATATTTTTTGTATCAATGATCTGGCGAATTATCAATGATTCA
TTCTTAGATTTTCTAAATGACGAATAAATGACGAAGAGATCAAAAATTTTCACTATTCTGAAATGCTGAT
TGTAATACTAATAAGGGGTAAATCAACTGAGTATTCAACTTTTTTAAGTCTTTCTAATTTCTATAAGAAA
GGAACTGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAGTGCAAGCACGGCTTGGGGAGGGATCTTT
ACTTGTTTATTTAATTTAAGATTAACATTTATTTTATTTAACAAGGAACTTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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