The detailed information of tRNA gene sequence


Sequence ID>CHL090800220
Genome IDDQ864733
Search identical group
Phylum/ClassViridiplantae
SpeciesCitrus sinensis
Start position on genome 55480
End posion on genome 54814
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
cacaaggaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTAGGTAGAGCACCTCGTTTACAATTAGTTCGATCTGTTTTACCG
AGAAGGTCTACGGTTCGAGTCCGTATAGCCCTAtac
Downstream region at tRNA end position 
taatctcaaa
Secondary structure (Cloverleaf model)
>CHL090800220	Val	TAC
                   a      Atac taatctcaaa
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        A     TCGATCTGTTTTACCGAGAAGGTC
                    C   T
                    C - G
                    T - A
                    C   T
                    G + T
                  T       A
                  T       A
                    T A C *
intron: position=37, length=574 (in A-loop)
ACGTGCGCCAATGTTTTTCAGAGGAGTCCATCATGCAATCAAAAGAATTGATCTTTTTGAGAAATTAATG
TCTGACTCCGTGGCTTGTAGGGAACAAAACAAGAGAACAATAGCCTGACAAATGGATCGGTCCGATTCGG
GTGCCCTTTTAGGAACCAAATAGAATCCATCATCGATTTGAGAGATTGATAAGGTAAATACCTAGTCTAT
TCAATGCTAGGCATAATGAGTATAAGGACCTCAAAAATTCTCTTTTCGTTCTATGAACCTTAAGGCGTAT
GAAGTTTCATATGTGATTCTTTAATCAGGATGATAGAGACTCCATTTCGTTTAGGTTGATCTAGGCCATA
AGCAGACCTACGTCAAGATAACCCTTCTTTGAAACACTTTGGGAGTGCTCCTATATCCGAATCCAAATAA
TGAATTAGAGCACATGGAGCCATTTCCTTAGTTGTCTGTCAAGAAAAAAATATGGTAGACTAACTGATAT
TTCTATCAGTTAATGAAAGAGCCCAATGCAAAAAAAAAAAAATGCATGTTGGGTCTTTGAAAGAGTTCGA
ATCATTTTGATAAG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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