The detailed information of tRNA gene sequence


Sequence ID>CHL090800251
Genome IDDQ898156
Search identical group
Phylum/ClassViridiplantae
SpeciesDaucus carota
Start position on genome 4087
End posion on genome 1536
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttttatattc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACCg
Downstream region at tRNA end position 
acacaaaaag
Secondary structure (Cloverleaf model)
>CHL090800251	Lys	TTT
                   c      ACCg acacaaaaag
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2478 (in A-loop)
GTGCGGCTAGGATCTTTTACACATTTGGATGAAGCGAGGGATTCGTCCATACCATCGGTAAAGTTTGGAA
GACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAAGAGCATGTCGGATCAACGAAGATTTCTGAGGA
ATATTTCATTCTTTCCGAATAGGTACAAACCCTTGTGTTCTTTTTTGAAACGGAACAAAATGAATTCAAT
TTCAAGTTGGGTCGGATGAATAAATGGATAGAGATAGAGCCCTAATGGCTTCAATTTATTGATTATAGGG
AAAAAAGCAACGAGCTTCTGTTCTTAATTTGAACGATTACCCGATCTAATTAGACGTTAAAAATGTATTA
GTACCTGATACGGGAAGAGATTATCCCATGAACGGATTTTTTTTTTGAATCCTAACTATTGACATTTTCC
GTTATGGAATACAAATGAGAAATGCGTGTAGAAGAAACAGTATATTGATAAAAAAATTCCAAAATCAAAA
GAGCGATTAGGGTGAAAAAATAAAGGATTTCTAAGTATTTTGTTATCCTATACGAATATAAATTTTTCGT
TTAAATGGAAAAGAGAGGATAGAGGATCCGTTGATAAGTTTACCTGTATCCGAGGTATCTATTCGTTTAT
TACTAGAATACCTCGTTTTGACTATATCGCACTATGTTTCATTGATAACCCCCAAAATCCTCTACCTTTA
GTTCAACTAGAATTTCAAATGGAGGAATTCCAAAGATATTTAAAGCTAAATAGATCTCAACAACACTACT
TCTTATATCCACTTATCTTTCAGGAGTATATTTATGCACTTGCGCATGATCATGGTTTAAATAGAAATAG
ATCCATTTTTTTGGAAAATGTGGGTTATAATAAATTCAGTTTACTAATTGTGAAACGTGCAATTGAGCGA
ATGTATCAGTATGAGCAGAAGCATTTGATTCTTTTTGATAATGATTTTAACCAAAATAGATTTTTTGGAC
GCAACAATAATTTTTCTTTTCAAATGATATCAGAAGGATTTGCAGTCATTGTAGAAATTCCGTTTTATCT
CCGATTATTATCTTCGCTAGAAAAGAAAGGAATAGTGAAATCTAATAATTTACGATCAATTCATTCAATA
TTCCCTTTTTTAGAGGACAATTTTTCACATTTAATTTATGTATTAGAGATACTAATACCCTACCCAGCCC
ATCTGGAAATATTGATTCAAACTCTGCGCTACTGGGTAAAAGACGCTTCTTCTTTACATTTATTACGATT
CTTTCTCCATGAGTATCGTAGTTGGAATACGCCAAATAAAGCCAGTTCTTTTTTTTCAAAAAGAAATCAA
AGGTTTTTCTTCGTCCTATATAATTCTCATATATGTGAATATGAATCCATCTTCGTCTTTCTTCGTAACC
AATCTTCTCATTTATGTTCAACCTCTTCTGGAACCCTTCTTGAACGAATCTATTTCTATGGAAAACTAGA
ACATCTTGTACTTGTAGAAGCTTTTGCTAAGGCCTTTCAGGCCAATCTATGGTTGTTTAAGGATCCTTTC
ATGCATTATGTTAGGTATCAAGGAAAATCAATTCTCGCTTCAAAAGGGACACCCCCTTTGATGAAAAAAT
GGACATATTACTTTGTCAATTTATGGGAATGTCGTTTTTACCTATGGTCTCAGCCGGGACGGATCTGTAT
AAACCAATTATATAATAATTCCCTATCTCTTCTGGGATATATATCAAGTGCGGGACTAAACCCTTCAATG
GTCCGCAGTCAAATGTTAGAAAATGCATTTATAATTGATAATCCTATTAAAAAGTTCGATACTCTTGTTC
CAATTGTTCCTCTGATTGGATCATTGGCTAAGGCGAGATTTTGTAACGTATTGGGGCACCCTATTAGTAA
GGCGGTTTGGACTGATTTATCAGATTCTGATATTATTGTCCGATTTGGGCGTATATGCAGAAATCTTTCT
CATTTTTTTAGTGGATCCTCACAAAAAAAGAGTTTGTATCGAATAAAGTATATACTTCGGCTGTCTTGTG
CTAGAACTTTGGCTCGTAAACATAAAAGTACTGTACGTGCTTTTTTGAAAAGATCGGGCTCGGGGTTATT
GGAAGAATTCTTTACGGCGGAAGAGCAAGTCCTTTATTTGACCTTTCCAAGAGCTTCTTCCACTTCGCAT
AGGTTATATAGAAGGCGTATTTGGTATTTGGATATTATTTGTATCAATGATTTGGCCAGTCATGAATTGA
ATGATTCGTTAGTCTAAGTAATGAAGATAAATAATGAAGAGATAACAAATTCTTTTTCTGAAATGTTGAT
GTAGGATGTAGTAAGGGTTAAATCAACCGAGTATTCAACTTTTTGAAAGTTCTAAGTAAGAAACCGGGTT
TTAAATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGGGGTTTTTACC
TATTTAACAGGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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