The detailed information of tRNA gene sequence


Sequence ID>CHL090800274
Genome IDEF115541
Search identical group
Phylum/ClassViridiplantae
SpeciesHordeum vulgare subsp. vulgare
Start position on genome 47154
End posion on genome 47808
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
agagggaagT
tRNA gene sequence 
GGGGATATGGCGAAATCGGTAGACGCTACGGACTTAAAATCCGTCGACTTTTTAAGTTGT
GAGGGTTCAAGTCCCTCTATCCCCAatc
Downstream region at tRNA end position 
ctcttttttt
Secondary structure (Cloverleaf model)
>CHL090800274	Leu	TAA
                   T      Aatc ctcttttttt
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    C       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTTTAAGTTGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=568 (in A-loop)
GATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATTA
AAAAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAGGGATTCTCGAACTAGAATACAAAGGAAAAGG
ATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACGTTGTGTTGTTAGTGGAATT
CCTTCTAATTCTAAATTAGAGAAAGAGGGGTTTTATACTTTATACATTTAATAAACACGTATAGATACTG
ACATAGCAAACGATTAATCACAGAACTCATATTATAATATAGGTTCTTTATCTTTTTTAAAATTTCAAAA
TAAAATTCGAAATGATTATGAAATAAAAAACTCATATCATAATTTTATTTTGAATTATTGTGAATCCACT
CCATTCGAATATTGAATAATCAAATTCTTCAATTCAAATTCAAAGTTTTGAGAACTTTTAAAAAGAAAGT
GGATTAATCGGACGAGGACAAAGAGAGAGTCCCATTCTACATGTCAATACTGACAACAATGAAATTTCTA
GTAAAAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK