The detailed information of tRNA gene sequence


Sequence ID>CHL090800275
Genome IDEF115541
Search identical group
Phylum/ClassViridiplantae
SpeciesHordeum vulgare subsp. vulgare
Start position on genome 51857
End posion on genome 51186
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
atctctgata
tRNA gene sequence 
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACCGTTTGATCTGTTTTACCGAG
AAGGTCTACGGTTCGAATCCGTATAGCCCTAata
Downstream region at tRNA end position 
tgcccttttt
Secondary structure (Cloverleaf model)
>CHL090800275	Val	TAC
                   a      Aata tgcccttttt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        A     GATCTGTTTTACCGAGAAGGTC
                    A - T
                    C   T
                    T   T
                    C - G
                    G - C
                  T       C
                  T       A *
                    T A C
intron: position=38, length=581 (in A-loop)
CGTGCGCCAATGCTTTTCAAAGGAGCTTATTATGCAATGAACATAATCGATCTTATTGCAAAATCAATGT
CTTACTTCATAGATTCGAGAGAATAGGAGAACAGTAGCCTGACAAACAGTCGGTTCAGTCCGATTCAGGT
GCCAATTCAGGTGCCTAATCAAATAGAACCCTTATGGATTTGCTAGTTGATAAGGTAAATATCCAGCCCA
CTAAATGCTAGGCGTAATGAGGATAAGGGCCTCCAAAAAACTTCTTTTCGTTCTATGAACTTTAAGGTGT
ATGAAGTCTCATAGTTAACTCTTGCAGTGGAACGATAGAGACTCCATTTCACTTAGGTTGATTTAATTTA
GACCAGAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGCTCCTAGATAGATCAT
AATACAAAAAATCAATCAGAGCACAGGGAGCCATCTCATTATCTTTCCGTAAAGAAAAACTATGGTGGAC
TAACTGATCTTTAAATCAGTTTATGAAAGAGCCCAATGCAAAAAAATGCATGTTGGGTCTTTGAAACAGT
TCAAATCATTTCGATAATAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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