The detailed information of tRNA gene sequence


Sequence ID>CHL090800283
Genome IDEF115542
Search identical group
Phylum/ClassViridiplantae
SpeciesSorghum bicolor
Start position on genome 54572
End posion on genome 53895
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
atctctgaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACCGTTTGATCTGTTTTACCGAG
AAGGTCTACGGTTCGAATCCGTATAGCCCTAata
Downstream region at tRNA end position 
tatacgtctt
Secondary structure (Cloverleaf model)
>CHL090800283	Val	TAC
                   a      Aata tatacgtctt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        A     GATCTGTTTTACCGAGAAGGTC
                    A - T
                    C   T
                    T   T
                    C - G
                    G - C
                  T       C
                  T       A *
                    T A C
intron: position=38, length=587 (in A-loop)
CGTGCGCCAATGCTTTTCAAGGGAACTTATTATGCAATGAACATAATTGACCTTGTTGCAAAATCAATGT
CTTACTTCATGGATTCGAAAGAATAGAAGAACAGTAGCCTGACAATGACAAACAGCCGGTTCAGTCCGAT
TCAGGTGCCAATTCAGGTGCTTACTCAAATAGAACCCCTATTGATTTGCTAGTTGATAAGGTAAATATCC
AGCCCACTCAATGCTAGGCGTAATGAGGATAAGGGCCTCCAAAAAACTTCTTTTCGTTCTATGAACTTTA
AGGTGTATGAAGTCTCATAGTAAACTCTTGCAGCGGAACGATAGAGACTCCATTTCACTTAGGTTGATTT
AATTTAGGCCGGAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGTTCCTAGATA
GATCATAAGACAAATAATCAATCAGAGCACAGGGAGCCATCTTATTATCTTTCCCTAAAGAAAAACTATG
GCGAATTAACTGATCTTTACATCAGTTGATGAAAGAGCCCAATGCAGAAAAATGCATGTTGGGTCTTTGA
AACAGTTCGAATCATTTCGATAATAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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