The detailed information of tRNA gene sequence


Sequence ID>CHL090800310
Genome IDEF489041
Search identical group
Phylum/ClassViridiplantae
SpeciesPopulus trichocarpa
Start position on genome 47028
End posion on genome 47708
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aaaacaaaga
tRNA gene sequence 
GGGGATATGGCGAAATTGGTAGACGCTACGGACTTAAAATCCGTCGACTTTATAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCaaaa
Downstream region at tRNA end position 
agggcccgct
Secondary structure (Cloverleaf model)
>CHL090800310	Leu	TAA
                   a      aaaa agggcccgct
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTATAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=596 (in A-loop)
AATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATAACTTTCAAATTCAGAGAAACCCCGGAAAAA
AAAGGGGCAATCCTGAGCCAAATCCTATTTTTCGAAAACAAACAAAAAAACAAACAAAGGTTCATAAAGA
CAGAATAAGAATACAAAAGGATAGGTGCAGAGACTCAATGGAAGTTGTTCTAACAAATAGAGTTGACTGC
GTTGCATTAGTCAAGTAAAGGAATCCTTCTGTTAAAGTTAAAATTCCAGAAAAAAGAAAGTTAAAGTAAA
GTATAACCCTATAAACATAATACATAGGAAACATAATACATAGGCATACGTACTGAAATACTATCTCAAA
TGATTAATGACAACCGACTCGAATCTGTATTTTATTCTATTTATATGAAAAATTAAATAATTAATAATTC
AAATAATAATAAAAAAAAAATTGCTTTGATTTGAATCGATTCCAAGTTGACGAGAGGATCGAATATTCAT
TGATCAGATCATTCACCCCAGAGTCTGCTGATTAATTGGACGAGAGTAAAGATAGAGTCCCATTCTACAT
GTCAATATCGACAACAAAGAAATTTATAGTAAAAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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