The detailed information of tRNA gene sequence


Sequence ID>CHL090900009
Genome IDAB086179
Search identical group
Phylum/ClassViridiplantae
SpeciesAnthoceros formosae
Start position on genome 69517
End posion on genome 68787
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
caggaaaaga
tRNA gene sequence 
AGGGCTATAGCTCAGCGGTAGAGCGCCTCGTTTACACCGAGAATGTCTACGGTTCAAATC
CGTATAGCCCTActt
Downstream region at tRNA end position 
tcttttacta
Secondary structure (Cloverleaf model)
>CHL090900009	Val	TAC
                   a      Actt tcttttacta
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
        G A        A      | | | | |     A
      C     C T C G       T A C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     ATGTC
                    C   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=659 (in A-loop)
GTGCGCCAATGCTTCTCGAAAATGTTCATCGATTCATCCGATTTATGATAAAAATCTTGTGTAACAAATT
CATGTCTTACTCTTCTTCACTTTTTGATAAGAGAACAGTAGCATGACAAAAGAAAAAAAGGAGTGAAAGT
TTATCATTTTATTATTCGTATCTTATTAAATATGAATTATTAAAATCTAATTATATATAAACTTGACTCC
TTCTAATCTGGAATTACAATTTAGTTGATATGGTAAATTTTTGGTTTATTAATGCTAAGCATGATGAGGA
CGGTACGAGGACCTCCAGATATTCATCTTTTCGCTTGCCAAACTTTAAGGTGTATAAAGTTTTACATTTG
TTTCTAAGCGATATAATTTATTTCTTAATAAATCCATGCTGGATTAAGCATACCTACGTCAACATTAAAA
AACCTTTTCGAAAAATTTTGGAATTACTTCAAAAACATCTTCTATTAAAATGTTTTTTAGGTACGCAGAG
TCATCTTACTATCAAAAAAAAAACAAAGAAAAGGATGGCAGAATAATTAGTTTAAGCATTAGTTGAATTA
ATTAATGAAAGAGCTCAATGCAGGGAAAATTGCATGTTGAGTTCTTGAAACAACTTAAATAATACTTTTT
GTTATTCAAGAAGATTTAATTTGTTTTAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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