The detailed information of tRNA gene sequence


Sequence ID>CHL090900035
Genome IDAF494278
Search identical group
Phylum/ClassViridiplantae
SpeciesChaetosphaeridium globosum
Start position on genome 43842
End posion on genome 44417
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
ttacattttt
tRNA gene sequence 
AGGGCTATAGCTCAGCGGTAGAGCACCTCGTTTACACCGAGATTGTCTACGGTTCGAATC
CGTATAGCCCTttaa
Downstream region at tRNA end position 
agaattttat
Secondary structure (Cloverleaf model)
>CHL090900035	Val	TAC
                   t      ttaa agaattttat
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
        G A        A      | | | | |     G
      C     C T C G       T A C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     TTGTC
                    C   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=504 (in A-loop)
GTGCGCTAATGTTTTTTATAATTCAACTTTTATTGTTAATAAAGAAAACAGTTAAATTGTTTTCTTTTTA
TATCTAACTTGATTAAACAAAAATTAATAAGAAAAATAGCATGATAGCAAGAATTGAATTTTTTGATTCA
ATGACAATAAAAAACTGATAAATATGGTTAAAGTATAATAAAATCTTCATTTAGATTAACTTTAATGTTC
AATTCGATAAAAAGAACGAGGCTTTTAAAAATCACAGAAAAATAGCATATGGTGTATATACGTTTTTCTT
AATAAGCATAAAAAATCATCGTAAAACGAACAAACCTACTTTTATTTAATTTAACTTATAAAAAACTTTA
GGAAAAGAATTTTTTTTTCGGAATCATCGTATTAATAAAAAATATAAAAGGATGAATTAATTCACTCTCT
TAATGAATTATTAAAGAGCCTAATGCATTTAAAAGTGCATGTTAGGTTCGAGAAGTTATATTGAATTTTA
CAATAAATCTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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