The detailed information of tRNA gene sequence


Sequence ID>CHL090900058
Genome IDAJ428413
Search identical group
Phylum/ClassViridiplantae
SpeciesCalycanthus floridus var. glaucus
Start position on genome 9399
End posion on genome 10243
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
tcagattgta
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAAGCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTC
CCGCTACCCGCtcat
Downstream region at tRNA end position 
atgaaattca
Secondary structure (Cloverleaf model)
>CHL090900058	Gly	TCC
                   a      tcat atgaaattca
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
      T G A        A      | | | | |     G
    G       T T T G       G C G G G     C
    G       | | + |                 T T
    T       A A G C
      A A          C     CGAT
                    C   A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=25, length=773
TGTGATTCGTTCTATTAACACCCAAAATGGATAAGGGTTCTTTCGGTTTAATTCCTATTCCGATCAAAAA
CTTTATTTCTTAAAAGGGTTTAATCCTTTACCTCTCAATGCCACGTTTGAGGAAGAATATACATTCTCGT
GATTTGTATCCAAAAGTGAAGTCAAGTCAATTAGAAATTGAATAAGAAAATTGGATTATAGAATCGCGAA
GCATAATTTTTTTTTTCGTTGGATCAACCCCTCCGATTGAATGACTATAAGTAAAGGATCCATGGATGAA
GAGACAAAAGTATATTTCTAATCGTAACTAGATCTTCAATTTTTTTTTCTTAGGGGATAAATTGAAGCCA
AATAGCTATTGAACGATGACTTTGGTTTACCAGAGCCGTCGACATATTGTTTCAGCTCGGTGGAAATAAA
ATGATTTTCCTAAGGATTCTCACAAGTAGAAATAGGGAACGAAGTAACTAGAAGGATTTGTGATAATCCC
CCTCTTTCTAGAGGGATCATCTAGAAAGCAAGCCGTTTTGCATGCATTCAGACAAAAAGCTGACATAGAT
GTTATGGGCCAATTTTTTTTTTTTTTGAATTCGGATTTGCTATGATTCCCCTTTTCCATACATCGTAAAT
GTGTGTGTTTTTTTTTTAGTTTTGTTTACGTCTTAGATCTGGGAATCCATCCATCTTCCATAAAGGAGCC
GAATGAAACGAAAAATTCATGTTCGGTTTTGTATTAGAGACGTTAAAAACGATGAATCAACGTCGACTAT
AAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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